How-to Guides¶
How-to guides which answer specific questions and goals related to Nextstrain.
Table of contents
- Installing Nextstrain
- Running Bioinformatic Analyses
- Manually Labeling Clades on a Nextstrain Tree
- Augur and snakemake
- Finding a
translateandalignreference file - Importing BEAST MCC trees into augur
- Adding Custom Trait Colors
- Adding Custom Lat-Long Data
- Using VCF Input
- Using Fasta Input
- Inferring Sequence Traits (like Drug Resistance)
- Estimate frequencies of phylogenetic clades through time
- Examples of Augur in the wild
- Sharing Analyses through Nextstrain
- Communicating scientific insights
- Contributing to Nextstrain